A call for an international network of genomic observatories (GOs)
Identifieur interne : 000533 ( Main/Exploration ); précédent : 000532; suivant : 000534A call for an international network of genomic observatories (GOs)
Auteurs : Neil Davies [Polynésie française, Royaume-Uni] ; Chris Meyer [États-Unis] ; Jack A. Gilbert [États-Unis] ; Linda Amaral-Zettler [États-Unis] ; John Deck [Polynésie française] ; Mesude Bicak [Royaume-Uni] ; Philippe Rocca-Serra [Royaume-Uni] ; Susanna Assunta-Sansone [Royaume-Uni] ; Kathy Willis [Royaume-Uni] ; Dawn Field [Royaume-Uni]Source :
- GigaScience [ 2047-217X ] ; 2012.
Abstract
We are entering a new era in genomics–that of large-scale, place-based, highly contextualized genomic research. Here we review this emerging paradigm shift and suggest that sites of utmost scientific importance be expanded into ‘Genomic Observatories’ (GOs). Investment in GOs should focus on the digital characterization of whole ecosystems, from all-taxa biotic inventories to time-series ’omics studies. The foundational layer of biodiversity–genetic variation–would thus be mainstreamed into Earth Observation systems enabling predictive modelling of biodiversity dynamics and resultant impacts on ecosystem services.
Url:
DOI: 10.1186/2047-217X-1-5
PubMed: 23587188
PubMed Central: 3617453
Affiliations:
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MRC-163, Washington, DC, 20013, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Invertebrate Zoology, National Museum of Natural History, Smithsonian Institution, PO Box 37012, MRC-163, Washington, DC, 20013</wicri:regionArea><wicri:noRegion>20013</wicri:noRegion></affiliation></author><author><name sortKey="Gilbert, Jack A" sort="Gilbert, Jack A" uniqKey="Gilbert J" first="Jack A" last="Gilbert">Jack A. 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Amaral-Zettler</name><affiliation wicri:level="1"><nlm:aff id="I6">The Josephine Bay Paul Center for Comparative Molecular Biology and Evolution, Marine Biological Laboratory, Woods Hole, MA, 02543, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>The Josephine Bay Paul Center for Comparative Molecular Biology and Evolution, Marine Biological Laboratory, Woods Hole, MA, 02543</wicri:regionArea><wicri:noRegion>02543</wicri:noRegion></affiliation></author><author><name sortKey="Deck, John" sort="Deck, John" uniqKey="Deck J" first="John" last="Deck">John Deck</name><affiliation wicri:level="1"><nlm:aff id="I1">Gump South Pacific Research Station, University of California Berkeley, BP 244 98728, Moorea, French Polynesia</nlm:aff><country xml:lang="fr">Polynésie française</country><wicri:regionArea>Gump South Pacific Research Station, University of California Berkeley, BP 244 98728, 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xml:lang="fr">Royaume-Uni</country><wicri:regionArea>Oxford e-Research Centre, University of Oxford, 7 Keble Road, Oxford, OX1 3QG</wicri:regionArea><orgName type="university">Université d'Oxford</orgName><placeName><settlement type="city">Oxford</settlement><region type="nation">Angleterre</region><region type="région" nuts="1">Oxfordshire</region></placeName></affiliation></author><author><name sortKey="Assunta Sansone, Susanna" sort="Assunta Sansone, Susanna" uniqKey="Assunta Sansone S" first="Susanna" last="Assunta-Sansone">Susanna Assunta-Sansone</name><affiliation wicri:level="4"><nlm:aff id="I8">Oxford e-Research Centre, University of Oxford, 7 Keble Road, Oxford, OX1 3QG, UK</nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>Oxford e-Research Centre, University of Oxford, 7 Keble Road, Oxford, OX1 3QG</wicri:regionArea><orgName type="university">Université d'Oxford</orgName><placeName><settlement type="city">Oxford</settlement><region type="nation">Angleterre</region><region type="région" nuts="1">Oxfordshire</region></placeName></affiliation></author><author><name sortKey="Willis, Kathy" sort="Willis, Kathy" uniqKey="Willis K" first="Kathy" last="Willis">Kathy Willis</name><affiliation wicri:level="4"><nlm:aff id="I2">Biodiversity Institute, Department of Zoology, University of Oxford, The Tinbergen Building, South Parks Road, Oxford, OX1 3PS, UK</nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>Biodiversity Institute, Department of Zoology, University of Oxford, The Tinbergen Building, South Parks Road, Oxford, OX1 3PS</wicri:regionArea><orgName type="university">Université d'Oxford</orgName><placeName><settlement type="city">Oxford</settlement><region type="nation">Angleterre</region><region type="région" nuts="1">Oxfordshire</region></placeName></affiliation></author><author><name sortKey="Field, Dawn" sort="Field, Dawn" uniqKey="Field D" first="Dawn" last="Field">Dawn Field</name><affiliation wicri:level="4"><nlm:aff id="I2">Biodiversity Institute, Department of Zoology, University of Oxford, The Tinbergen Building, South Parks Road, Oxford, OX1 3PS, UK</nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>Biodiversity Institute, Department of Zoology, University of Oxford, The Tinbergen Building, South Parks Road, Oxford, OX1 3PS</wicri:regionArea><orgName type="university">Université d'Oxford</orgName><placeName><settlement type="city">Oxford</settlement><region type="nation">Angleterre</region><region type="région" nuts="1">Oxfordshire</region></placeName></affiliation><affiliation wicri:level="1"><nlm:aff id="I7">Centre for Ecology & Hydrology, Maclean Building, Benson Lane, Crowmarsh Gifford, Wallingford, Oxfordshire, OX10 8BB, UK</nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>Centre for Ecology & Hydrology, Maclean Building, Benson Lane, Crowmarsh Gifford, Wallingford, Oxfordshire, OX10 8BB</wicri:regionArea><wicri:noRegion>OX10 8BB</wicri:noRegion></affiliation><affiliation wicri:level="4"><nlm:aff id="I8">Oxford e-Research Centre, University of Oxford, 7 Keble Road, Oxford, OX1 3QG, UK</nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>Oxford e-Research Centre, University of Oxford, 7 Keble Road, Oxford, OX1 3QG</wicri:regionArea><orgName type="university">Université d'Oxford</orgName><placeName><settlement type="city">Oxford</settlement><region type="nation">Angleterre</region><region type="région" nuts="1">Oxfordshire</region></placeName></affiliation></author></analytic><series><title level="j">GigaScience</title><idno type="eISSN">2047-217X</idno><imprint><date when="2012">2012</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>We are entering a new era in genomics–that of large-scale, place-based, highly contextualized genomic research. Here we review this emerging paradigm shift and suggest that sites of utmost scientific importance be expanded into ‘Genomic Observatories’ (GOs). Investment in GOs should focus on the digital characterization of whole ecosystems, from all-taxa biotic inventories to time-series ’omics studies. The foundational layer of biodiversity–genetic variation–would thus be mainstreamed into Earth Observation systems enabling predictive modelling of biodiversity dynamics and resultant impacts on ecosystem services.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Mora, C" uniqKey="Mora C">C Mora</name></author><author><name sortKey="Tittensor, Dp" uniqKey="Tittensor D">DP Tittensor</name></author><author><name sortKey="Adl, S" uniqKey="Adl S">S Adl</name></author><author><name sortKey="Simpson, Ag" uniqKey="Simpson A">AG Simpson</name></author><author><name sortKey="Worm, B" uniqKey="Worm B">B Worm</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Check, E" uniqKey="Check E">E Check</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Metzker, Ml" uniqKey="Metzker M">ML Metzker</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Stein, 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Wilbanks</name></author></analytic></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct></listBibl></div1></back></TEI><affiliations><list><country><li>Polynésie française</li><li>Royaume-Uni</li><li>États-Unis</li></country><region><li>Angleterre</li><li>Oxfordshire</li></region><settlement><li>Oxford</li></settlement><orgName><li>Université d'Oxford</li></orgName></list><tree><country name="Polynésie française"><noRegion><name sortKey="Davies, Neil" sort="Davies, Neil" uniqKey="Davies N" first="Neil" last="Davies">Neil Davies</name></noRegion><name sortKey="Deck, John" sort="Deck, John" uniqKey="Deck J" first="John" last="Deck">John Deck</name></country><country name="Royaume-Uni"><region name="Angleterre"><name sortKey="Davies, Neil" sort="Davies, Neil" uniqKey="Davies N" first="Neil" last="Davies">Neil Davies</name></region><name sortKey="Assunta Sansone, Susanna" sort="Assunta Sansone, Susanna" uniqKey="Assunta Sansone S" first="Susanna" last="Assunta-Sansone">Susanna Assunta-Sansone</name><name sortKey="Bicak, Mesude" sort="Bicak, Mesude" uniqKey="Bicak M" first="Mesude" last="Bicak">Mesude Bicak</name><name sortKey="Field, Dawn" sort="Field, Dawn" uniqKey="Field D" first="Dawn" last="Field">Dawn Field</name><name sortKey="Field, Dawn" sort="Field, Dawn" uniqKey="Field D" first="Dawn" last="Field">Dawn Field</name><name sortKey="Field, Dawn" sort="Field, Dawn" uniqKey="Field D" first="Dawn" last="Field">Dawn Field</name><name sortKey="Rocca Serra, Philippe" sort="Rocca Serra, Philippe" uniqKey="Rocca Serra P" first="Philippe" last="Rocca-Serra">Philippe Rocca-Serra</name><name sortKey="Willis, Kathy" sort="Willis, Kathy" uniqKey="Willis K" first="Kathy" last="Willis">Kathy Willis</name></country><country name="États-Unis"><noRegion><name sortKey="Meyer, Chris" sort="Meyer, Chris" uniqKey="Meyer C" first="Chris" last="Meyer">Chris Meyer</name></noRegion><name sortKey="Amaral Zettler, Linda" sort="Amaral 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Gilbert</name><name sortKey="Gilbert, Jack A" sort="Gilbert, Jack A" uniqKey="Gilbert J" first="Jack A" last="Gilbert">Jack A. Gilbert</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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